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Tutorials
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I. Architecture of HLASSB_DB |
II. HLA Class I supertypes and alleles includes in HLASSB_DB |
III. Usage of HLASSB_DB |
i. Seach for peptides cross-binding to the HLA molecules in the same supertype |
ii. Browse the supertype-specific HLA classI-binding data by source species and protein |
iii. Search for HLA supertype-specific binding peptides by protein sequence |
iv. Search for mutated analogues of an input peptide |
v. Search for promiscuous peptides binding to alleles across HLA class I supertypes |
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Architecture of HLASSB_DB
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HLA Class I supertypes and alleles includes in HLASSB_DB
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Ref: Sidney J, Peters B, Frahm N, Brander C, Sette A. HLA class I supertypes: a revised and updated classification. BMC Immunol. 2008 Jan 22;9:1 |
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Usage of HLASSB_DB
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Seach for peptides cross-binding to the HLA molecules in the same supertype
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"Input a peptide sequence": amino acid sequence coding with uppercase letters. example : "FLPSDFFPSV"
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Browse the supertype-specific HLA classI-binding data by source species and protein
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Browse the supertype-specific HLA classI-binding data by source species and protein, Once the source species was selected the corresponding proteins included in HLASSB_DB was shown, and the users could selected the protein name in "Browse the peptides by source protein". |
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Search for HLA supertype-specific binding peptides by protein sequence
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Search for HLA supertype-specific binding peptides by protein sequence, the protein name could give an arbitrary name. The protein sequence should be a plain sequence. Such as: |
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Search for mutated analogues of an input peptide
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Search for mutated analogues of an input peptide, amino acid sequence coding with uppercase letters. example : "FLPSDFFPSV". |
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Search for promiscuous peptides binding to alleles across HLA class I supertypes
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Search for promiscuous peptides binding to alleles across HLA class I supertypes, user should select at least two different supertypes. |
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